Detailed information of SNP:
|
SNP ID:
sf1218143460(Gbrowse)
Chromosome: chr12 Position: 18143460 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 83.57% | 16.43% |
| All Indica | 798 | 75.69% | 24.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 89.60% | 10.40% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 211 | 72.04% | 27.96% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218143460 | G->C | INTERGENIC | None |