Detailed information of SNP:
|
SNP ID:
sf1218144644(Gbrowse)
Chromosome: chr12 Position: 18144644 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1411 | 86.32% | 13.68% |
| All Indica | 792 | 77.40% | 22.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 369 | 56.64% | 43.36% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 90.95% | 9.05% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218144644 | A->C | LOC_Os12g30300(LOC_Os12g30300.1) | INTRON |