Detailed information of SNP:
|
SNP ID:
sf1218164744(Gbrowse)
Chromosome: chr12 Position: 18164744 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 92.39% | 7.61% |
| All Indica | 799 | 91.11% | 8.89% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218164744 | G->C | INTERGENIC | None |