Detailed information of SNP:
|
SNP ID:
sf1218165527(Gbrowse)
Chromosome: chr12 Position: 18165527 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 62.66% | 37.34% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 26.60% | 73.40% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218165527 | A->T | INTERGENIC | None |