Detailed information of SNP:
|
SNP ID:
sf1218165728(Gbrowse)
Chromosome: chr12 Position: 18165728 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1329 | 98.50% | 1.50% |
| All Indica | 794 | 100.00% | 0.00% |
| All Japonica | 415 | 95.18% | 4.82% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 92.93% | 7.07% |
| Tropical Japonica | 78 | 100.00% | 0.00% |
| Japonica Intermediate | 54 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218165728 | T->A | INTERGENIC | None |