Detailed information of SNP:
|
SNP ID:
sf1218179247(Gbrowse)
Chromosome: chr12 Position: 18179247 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 79.53% | 20.47% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 496 | 51.01% | 48.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 57.91% | 42.09% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218179247 | G->A | INTERGENIC | None |