Detailed information of SNP:
|
SNP ID:
sf1218179312(Gbrowse)
Chromosome: chr12 Position: 18179312 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 71.32% | 28.68% |
| All Indica | 799 | 82.98% | 17.02% |
| All Japonica | 497 | 50.70% | 49.30% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 76.53% | 23.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 57.61% | 42.39% |
| Tropical Japonica | 94 | 28.72% | 71.28% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218179312 | C->T | INTERGENIC | None |