Detailed information of SNP:
|
SNP ID:
sf1218180133(Gbrowse)
Chromosome: chr12 Position: 18180133 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.88% | 35.12% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 10.66% | 89.34% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218180133 | A->G | INTERGENIC | None |