Detailed information of SNP:
|
SNP ID:
sf1218180890(Gbrowse)
Chromosome: chr12 Position: 18180890 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 53.51% | 46.49% |
| All Indica | 792 | 30.30% | 69.70% |
| All Japonica | 495 | 94.55% | 5.45% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 32.62% | 67.38% |
| Indica II | 212 | 30.66% | 69.34% |
| Indica Intermediate | 206 | 25.73% | 74.27% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218180890 | C->T | INTERGENIC | None |