Detailed information of SNP:
|
SNP ID:
sf1218182395(Gbrowse)
Chromosome: chr12 Position: 18182395 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 79.04% | 20.96% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 51.01% | 48.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 57.61% | 42.39% |
| Tropical Japonica | 93 | 30.11% | 69.89% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218182395 | C->T | INTERGENIC | None |