Detailed information of SNP:
|
SNP ID:
sf1218200331(Gbrowse)
Chromosome: chr12 Position: 18200331 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 63.32% | 36.68% |
| All Indica | 790 | 94.05% | 5.95% |
| All Japonica | 483 | 9.32% | 90.68% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 368 | 93.48% | 6.52% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 329 | 2.74% | 97.26% |
| Tropical Japonica | 91 | 25.27% | 74.73% |
| Japonica Intermediate | 63 | 20.63% | 79.37% |
| Group VI/Aromatic | 13 | 30.77% | 69.23% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218200331 | C->T | LOC_Os12g30360(LOC_Os12g30360.1) | Synonymous |