Detailed information of SNP:
|
SNP ID:
sf1218208601(Gbrowse)
Chromosome: chr12 Position: 18208601 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 63.30% | 36.70% |
| All Indica | 794 | 94.96% | 5.04% |
| All Japonica | 491 | 8.76% | 91.24% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 373 | 95.71% | 4.29% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 91 | 26.37% | 73.63% |
| Japonica Intermediate | 66 | 19.70% | 80.30% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218208601 | C->T | INTERGENIC | None |