Detailed information of SNP:
|
SNP ID:
sf1218220097(Gbrowse)
Chromosome: chr12 Position: 18220097 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1223 | 91.74% | 8.26% |
| All Indica | 775 | 95.87% | 4.13% |
| All Japonica | 349 | 82.81% | 17.19% |
| Aus | 60 | 96.67% | 3.33% |
| Indica I | 371 | 99.19% | 0.81% |
| Indica II | 204 | 94.12% | 5.88% |
| Indica Intermediate | 200 | 91.50% | 8.50% |
| Temperate Japonica | 257 | 92.61% | 7.39% |
| Tropical Japonica | 52 | 42.31% | 57.69% |
| Japonica Intermediate | 40 | 72.50% | 27.50% |
| Group VI/Aromatic | 6 | 33.33% | 66.67% |
| Intermediate | 33 | 90.91% | 9.09% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218220097 | C->T | LOC_Os12g30410(LOC_Os12g30410.1) | Synonymous |