Detailed information of SNP:
|
SNP ID:
sf1218238841(Gbrowse)
Chromosome: chr12 Position: 18238841 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 62.11% | 37.89% |
| All Indica | 796 | 62.81% | 37.19% |
| All Japonica | 493 | 57.61% | 42.39% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 57.37% | 42.63% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 333 | 42.94% | 57.06% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218238841 | C->T | INTERGENIC | None |