Detailed information of SNP:
|
SNP ID:
sf1218254853(Gbrowse)
Chromosome: chr12 Position: 18254853 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 799 | 88.99% | 11.01% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 2.10% | 97.90% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218254853 | G->T | INTERGENIC | None |