Detailed information of SNP:
|
SNP ID:
sf1218255921(Gbrowse)
Chromosome: chr12 Position: 18255921 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.46% | 41.54% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 496 | 1.21% | 98.79% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218255921 | A->G | INTERGENIC | None |