Detailed information of SNP:
|
SNP ID:
sf1218258956(Gbrowse)
Chromosome: chr12 Position: 18258956 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 66.45% | 33.55% |
| All Indica | 797 | 48.43% | 51.57% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 59.89% | 40.11% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 210 | 48.57% | 51.43% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218258956 | G->A | INTERGENIC | None |