Detailed information of SNP:
|
SNP ID:
sf1218259014(Gbrowse)
Chromosome: chr12 Position: 18259014 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.67% | 33.33% |
| All Indica | 799 | 48.56% | 51.44% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 49.29% | 50.71% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218259014 | G->T | LOC_Os12g30460(LOC_Os12g30460.1) | Non-Synonymous SNP |