Detailed information of SNP:
|
SNP ID:
sf1218259329(Gbrowse)
Chromosome: chr12 Position: 18259329 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 60.27% | 39.73% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 492 | 1.63% | 98.37% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 330 | 1.52% | 98.48% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218259329 | T->C | LOC_Os12g30460(LOC_Os12g30460.1) | INTRON |