Detailed information of SNP:
|
SNP ID:
sf1218261415(Gbrowse)
Chromosome: chr12 Position: 18261415 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 53.84% | 46.16% |
| All Indica | 799 | 52.94% | 47.06% |
| All Japonica | 497 | 50.50% | 49.50% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 61.79% | 38.21% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218261415 | T->G | LOC_Os12g30460(LOC_Os12g30460.1) | INTRON |