Detailed information of SNP:
|
SNP ID:
sf1218262351(Gbrowse)
Chromosome: chr12 Position: 18262351 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.88% | 38.12% |
| All Indica | 795 | 63.14% | 36.86% |
| All Japonica | 496 | 55.24% | 44.76% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 373 | 57.64% | 42.36% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 209 | 71.77% | 28.23% |
| Temperate Japonica | 334 | 63.17% | 36.83% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218262351 | C->T | LOC_Os12g30460(LOC_Os12g30460.1) | INTRON |