Detailed information of SNP:
|
SNP ID:
sf1218266151(Gbrowse)
Chromosome: chr12 Position: 18266151 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 65.40% | 34.60% |
| All Indica | 799 | 76.72% | 23.28% |
| All Japonica | 497 | 44.06% | 55.94% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 71.20% | 28.80% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218266151 | G->A | INTERGENIC | None |