Detailed information of SNP:
|
SNP ID:
sf1218266242(Gbrowse)
Chromosome: chr12 Position: 18266242 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 74.54% | 25.46% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 496 | 43.55% | 56.45% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 54.63% | 45.37% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218266242 | C->A | INTERGENIC | None |