Detailed information of SNP:
|
SNP ID:
sf1218283249(Gbrowse)
Chromosome: chr12 Position: 18283249 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 62.95% | 37.05% |
| All Indica | 798 | 96.74% | 3.26% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 97.59% | 2.41% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218283249 | C->T | LOC_Os12g30510(LOC_Os12g30510.2) | UTR_3_PRIME |
| sf1218283249 | C->T | LOC_Os12g30510(LOC_Os12g30510.1) | INTRON |