Detailed information of SNP:
|
SNP ID:
sf1218291633(Gbrowse)
Chromosome: chr12 Position: 18291633 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1327 | 98.64% | 1.36% |
| All Indica | 795 | 100.00% | 0.00% |
| All Japonica | 411 | 95.62% | 4.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 287 | 93.73% | 6.27% |
| Tropical Japonica | 69 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218291633 | G->A | INTERGENIC | None |