Detailed information of SNP:
|
SNP ID:
sf1218292401(Gbrowse)
Chromosome: chr12 Position: 18292401 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 60.47% | 39.53% |
| All Indica | 799 | 38.67% | 61.33% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 14.67% | 85.33% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218292401 | T->C | INTERGENIC | None |