Detailed information of SNP:
|
SNP ID:
sf1218310934(Gbrowse)
Chromosome: chr12 Position: 18310934 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 61.68% | 38.32% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 496 | 5.44% | 94.56% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 67 | 22.39% | 77.61% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218310934 | G->A | LOC_Os12g30540(LOC_Os12g30540.1) | INTRON |