Detailed information of SNP:
|
SNP ID:
sf1218336589(Gbrowse)
Chromosome: chr12 Position: 18336589 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 68.48% | 31.52% |
| All Indica | 798 | 88.10% | 11.90% |
| All Japonica | 497 | 43.06% | 56.94% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 53.73% | 46.27% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218336589 | A->G | INTERGENIC | None |