Detailed information of SNP:
|
SNP ID:
sf1218381340(Gbrowse)
Chromosome: chr12 Position: 18381340 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.64% | 26.36% |
| All Indica | 795 | 56.98% | 43.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 374 | 43.05% | 56.95% |
| Indica II | 213 | 83.10% | 16.90% |
| Indica Intermediate | 208 | 55.29% | 44.71% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218381340 | G->A | INTERGENIC | None |