Detailed information of SNP:
|
SNP ID:
sf1218388056(Gbrowse)
Chromosome: chr12 Position: 18388056 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 88.87% | 11.13% |
| All Indica | 764 | 80.10% | 19.90% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 354 | 87.29% | 12.71% |
| Indica II | 209 | 80.86% | 19.14% |
| Indica Intermediate | 201 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218388056 | A->T | LOC_Os12g30660(LOC_Os12g30660.1) | Non-Synonymous SNP |