Detailed information of SNP:
|
SNP ID:
sf1218388704(Gbrowse)
Chromosome: chr12 Position: 18388704 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 92.32% | 7.68% |
| All Indica | 760 | 86.32% | 13.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 361 | 92.52% | 7.48% |
| Indica II | 204 | 85.29% | 14.71% |
| Indica Intermediate | 195 | 75.90% | 24.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218388704 | G->A | LOC_Os12g30660(LOC_Os12g30660.1) | Non-Synonymous SNP |