Detailed information of SNP:
|
SNP ID:
sf1218392994(Gbrowse)
Chromosome: chr12 Position: 18392994 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 92.02% | 7.98% |
| All Indica | 758 | 88.13% | 11.87% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 340 | 80.88% | 19.12% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 205 | 89.27% | 10.73% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218392994 | G->A | LOC_Os12g30670(LOC_Os12g30670.1) | Synonymous |