Detailed information of SNP:
|
SNP ID:
sf1218399759(Gbrowse)
Chromosome: chr12 Position: 18399759 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 92.11% | 7.89% |
| All Indica | 749 | 85.71% | 14.29% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 362 | 90.06% | 9.94% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 185 | 73.51% | 26.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218399759 | C->A | LOC_Os12g30680(LOC_Os12g30680.1) | Non-Synonymous SNP |