Detailed information of SNP:
|
SNP ID:
sf1218402206(Gbrowse)
Chromosome: chr12 Position: 18402206 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 64.15% | 35.85% |
| All Indica | 748 | 40.64% | 59.36% |
| All Japonica | 492 | 99.19% | 0.81% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 349 | 45.85% | 54.15% |
| Indica II | 199 | 41.71% | 58.29% |
| Indica Intermediate | 200 | 30.50% | 69.50% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218402206 | G->C | LOC_Os12g30690(LOC_Os12g30690.1) | Non-Synonymous SNP |