Detailed information of SNP:
|
SNP ID:
sf1218402605(Gbrowse)
Chromosome: chr12 Position: 18402605 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1349 | 94.81% | 5.19% |
| All Indica | 729 | 90.53% | 9.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 93.02% | 6.98% |
| Indica II | 196 | 92.35% | 7.65% |
| Indica Intermediate | 175 | 83.43% | 16.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218402605 | G->A | LOC_Os12g30690(LOC_Os12g30690.1) | Non-Synonymous SNP |