Detailed information of SNP:
|
SNP ID:
sf1218420300(Gbrowse)
Chromosome: chr12 Position: 18420300 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 71.91% | 28.09% |
| All Indica | 798 | 57.14% | 42.86% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 66 | 33.33% | 66.67% |
| Indica I | 374 | 43.58% | 56.42% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 55.45% | 44.55% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218420300 | C->T | LOC_Os12g30720(LOC_Os12g30720.1) | INTRON |