Detailed information of SNP:
|
SNP ID:
sf1218430154(Gbrowse)
Chromosome: chr12 Position: 18430154 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1343 | 60.76% | 39.24% |
| All Indica | 757 | 86.79% | 13.21% |
| All Japonica | 470 | 23.19% | 76.81% |
| Aus | 66 | 31.82% | 68.18% |
| Indica I | 352 | 86.08% | 13.92% |
| Indica II | 204 | 91.18% | 8.82% |
| Indica Intermediate | 201 | 83.58% | 16.42% |
| Temperate Japonica | 315 | 20.95% | 79.05% |
| Tropical Japonica | 92 | 28.26% | 71.74% |
| Japonica Intermediate | 63 | 26.98% | 73.02% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218430154 | C->T | LOC_Os12g30730(LOC_Os12g30730.1) | Synonymous |