Detailed information of SNP:
|
SNP ID:
sf1218443195(Gbrowse)
Chromosome: chr12 Position: 18443195 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 80.17% | 19.83% |
| All Indica | 797 | 66.75% | 33.25% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 88.24% | 11.76% |
| Indica II | 213 | 23.94% | 76.06% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218443195 | T->C | LOC_Os12g30760(LOC_Os12g30760.1) | INTRON |