Detailed information of SNP:
|
SNP ID:
sf1218450484(Gbrowse)
Chromosome: chr12 Position: 18450484 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1283 | 53.08% | 46.92% |
| All Indica | 703 | 33.29% | 66.71% |
| All Japonica | 478 | 84.94% | 15.06% |
| Aus | 54 | 27.78% | 72.22% |
| Indica I | 328 | 33.54% | 66.46% |
| Indica II | 188 | 32.45% | 67.55% |
| Indica Intermediate | 187 | 33.69% | 66.31% |
| Temperate Japonica | 326 | 89.88% | 10.12% |
| Tropical Japonica | 86 | 72.09% | 27.91% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 36 | 44.44% | 55.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218450484 | T->G | LOC_Os12g30770(LOC_Os12g30770.1) | Non-Synonymous SNP |