Detailed information of SNP:
|
SNP ID:
sf1218464944(Gbrowse)
Chromosome: chr12 Position: 18464944 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 87.33% | 12.67% |
| All Indica | 794 | 79.09% | 20.91% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 79.62% | 20.38% |
| Indica II | 212 | 74.53% | 25.47% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218464944 | T->C | LOC_Os12g30800(LOC_Os12g30800.1) | Non-Synonymous SNP |