Detailed information of SNP:
|
SNP ID:
sf1218479606(Gbrowse)
Chromosome: chr12 Position: 18479606 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 96.74% | 3.26% |
| All Indica | 794 | 96.98% | 3.02% |
| All Japonica | 496 | 96.37% | 3.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 95.95% | 4.05% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218479606 | C->T | INTERGENIC | None |