Detailed information of SNP:
|
SNP ID:
sf1218479674(Gbrowse)
Chromosome: chr12 Position: 18479674 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 78.75% | 21.25% |
| All Indica | 795 | 94.97% | 5.03% |
| All Japonica | 495 | 50.71% | 49.29% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 371 | 94.07% | 5.93% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 334 | 42.22% | 57.78% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218479674 | T->C | INTERGENIC | None |