Detailed information of SNP:
|
SNP ID:
sf1218485794(Gbrowse)
Chromosome: chr12 Position: 18485794 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 60.89% | 39.11% |
| All Indica | 794 | 33.12% | 66.88% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 373 | 28.15% | 71.85% |
| Indica II | 210 | 33.33% | 66.67% |
| Indica Intermediate | 211 | 41.71% | 58.29% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218485794 | G->A | LOC_Os12g30824(LOC_Os12g30824.2) | INTRON |
| sf1218485794 | G->A | LOC_Os12g30824(LOC_Os12g30824.1) | INTRON |