Detailed information of SNP:
|
SNP ID:
sf1218493815(Gbrowse)
Chromosome: chr12 Position: 18493815 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 94.29% | 5.71% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218493815 | A->G | LOC_Os12g30824(LOC_Os12g30824.2) | Synonymous |
| sf1218493815 | A->G | LOC_Os12g30824(LOC_Os12g30824.1) | Synonymous |