Detailed information of SNP:
|
SNP ID:
sf1218497713(Gbrowse)
Chromosome: chr12 Position: 18497713 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 53.18% | 46.82% |
| All Indica | 796 | 20.23% | 79.77% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 10.93% | 89.07% |
| Indica II | 211 | 21.33% | 78.67% |
| Indica Intermediate | 210 | 35.71% | 64.29% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218497713 | G->A | LOC_Os12g30824(LOC_Os12g30824.2) | INTRON |
| sf1218497713 | G->A | LOC_Os12g30824(LOC_Os12g30824.1) | INTRON |