Detailed information of SNP:
|
SNP ID:
sf1218498093(Gbrowse)
Chromosome: chr12 Position: 18498093 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.50% | 6.50% |
| All Indica | 798 | 95.11% | 4.89% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 36.36% | 63.64% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218498093 | G->A | LOC_Os12g30824(LOC_Os12g30824.2) | Non-Synonymous SNP |
| sf1218498093 | G->A | LOC_Os12g30824(LOC_Os12g30824.1) | Non-Synonymous SNP |