Detailed information of SNP:
|
SNP ID:
sf1218501047(Gbrowse)
Chromosome: chr12 Position: 18501047 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 65.25% | 34.75% |
| All Indica | 790 | 86.58% | 13.42% |
| All Japonica | 497 | 39.64% | 60.36% |
| Aus | 65 | 18.46% | 81.54% |
| Indica I | 374 | 90.11% | 9.89% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 206 | 69.42% | 30.58% |
| Temperate Japonica | 335 | 51.34% | 48.66% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218501047 | A->G | INTERGENIC | None |