Detailed information of SNP:
|
SNP ID:
sf1218511192(Gbrowse)
Chromosome: chr12 Position: 18511192 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 66.76% | 33.24% |
| All Indica | 781 | 84.12% | 15.88% |
| All Japonica | 484 | 33.26% | 66.74% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 367 | 81.47% | 18.53% |
| Indica II | 210 | 88.10% | 11.90% |
| Indica Intermediate | 204 | 84.80% | 15.20% |
| Temperate Japonica | 325 | 16.92% | 83.08% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 66 | 54.55% | 45.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218511192 | A->G | INTERGENIC | None |