Detailed information of SNP:
|
SNP ID:
sf1218514813(Gbrowse)
Chromosome: chr12 Position: 18514813 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1308 | 57.87% | 42.13% |
| All Indica | 715 | 45.73% | 54.27% |
| All Japonica | 478 | 81.59% | 18.41% |
| Aus | 62 | 35.48% | 64.52% |
| Indica I | 328 | 47.56% | 52.44% |
| Indica II | 199 | 37.69% | 62.31% |
| Indica Intermediate | 188 | 51.06% | 48.94% |
| Temperate Japonica | 327 | 92.66% | 7.34% |
| Tropical Japonica | 88 | 51.14% | 48.86% |
| Japonica Intermediate | 63 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218514813 | G->A | INTERGENIC | None |