Detailed information of SNP:
|
SNP ID:
sf1218555670(Gbrowse)
Chromosome: chr12 Position: 18555670 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 98.37% | 1.63% |
| All Indica | 792 | 97.10% | 2.90% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 96.77% | 3.23% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1218555670 | G->T | LOC_Os12g30940(LOC_Os12g30940.1) | Synonymous |